SRR12534293 - Polypedilum vanderplanki

Basic Information

Run: SRR12534293

Assay Type: WGS

Bioproject: PRJNA659554

Biosample: SAMN15915528

Bytes: 14927460

Center Name: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

Instrument: Illumina Genome Analyzer IIx

Library Layout: SINGLE

Library Selection: PCR

Platform: ILLUMINA

Country: Japan

Continent: Asia

Location Name: Japan

Latitude/Longitude: -

Isolation: laboratory strain

Biosample Model: Metagenome or environmental

Collection Date: 2014-04-11

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Gordonia	RISB1912	Hyles euphorbiae Order: Lepidoptera	able to degrade alkaloids and/or latex	56.42%	57.2
Nocardia	RISB0947	Acromyrmex Order: Hymenoptera	Pseudonocardia in the Acromyrmex leaf-cutter ants as a protective partner against the entomopathogenic fungus Metarhizium	32.47%	34.9
Nocardia	RISB1218	Mycocepurus smithii Order: Hymenoptera	produce secondary metabolites with antibiotic activity that protects the fungus garden against pathogens	32.47%	34.6
Mycobacterium	RISB1156	Nicrophorus concolor Order: Coleoptera	produces Antimicrobial compounds	11.11%	11.8