SRR11929554 - Ostrinia nubilalis

Basic Information

Run: SRR11929554

Assay Type: WGS

Bioproject: PRJNA636935

Biosample: SAMN15097440

Bytes: 1564730462

Center Name: NANJING AGRICULTURAL UNIVERSITY

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Geographic Information

Country: China

Continent: Asia

Location Name: China: Nanjing

Latitude/Longitude: -

Sample Information

Host: Ostrinia nubilalis

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2019-08-05T08:00:00Z

Taxonomic Classification

Potential Symbionts

About Potential Symbionts

This table shows potential symbiont identified in the metagenome sample. Matches are scored based on:

Relative abundance in the sample
Species-level matches with known symbionts
Host insect order matches with reference records
Completeness and richness of functional records

Note: only the three highest scoring comparison records were retained for each symbiont species or genus in the sample

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

Relative abundance in sample
Species-level matches with known symbionts
Host insect order matches
Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name	Record	Host Species	Function	Abundance	Score Score Composition: Symbiont Abundance Species match bonus Host match bonus Function richness Higher scores indicate stronger symbiotic relationship potential
Enterococcus faecalis Species-level Match Host Order Match	RISB0727	Bombyx mori Order: Lepidoptera	with anti-N. bombycis activity might play an important role in protecting silkworms from microsporidia	11.78%	28.8
Enterococcus faecalis Species-level Match Host Order Match	RISB0026	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	11.78%	27.8
Bacillus thuringiensis Species-level Match Host Order Match	RISB0109	Tuta absoluta Order: Lepidoptera	Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.	2.58%	22.2
Bacillus cereus Species-level Match Host Order Match	RISB2489	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	2.44%	21.4
Bacillus sp. AR4-2 Species-level Match Host Order Match	RISB2181	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.72%	20.7
Klebsiella pneumoniae Species-level Match Host Order Match	RISB2185	Scirpophaga incertulas Order: Lepidoptera	The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.	0.06%	20.1
Enterococcus mundtii Species-level Match Host Order Match	RISB1733	Spodoptera littoralis Order: Lepidoptera	actively secretes a stable class IIa bacteriocin (mundticin KS) against invading bacteria, including the opportunistic pathogens E. faecalis and E. casseliflavus, but not against other gut residents, facilitating the normal development of host gut microbiota	0.01%	20.0
Escherichia coli Species-level Match Host Order Match	RISB1339	Manduca sexta Order: Lepidoptera	modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation	0.24%	19.6
Enterobacter ludwigii Species-level Match Host Order Match	RISB1543	Helicoverpa zea Order: Lepidoptera	two immunity-related genes glucose oxidase (GOX) and lysozyme (LYZ) were more highly expressed in both salivary glands and midguts compared with MgCl2 solution-treated caterpillars	0.15%	18.8
Enterobacter sp. SES19 Species-level Match Host Order Match	RISB1392	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.09%	18.3
Enterobacter sp. JBIWA003 Species-level Match Host Order Match	RISB1392	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.04%	18.3
Klebsiella sp. WP8-S18-ESBL-06 Species-level Match Host Order Match	RISB1394	Spodoptera frugiperda Order: Lepidoptera	microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects	0.00%	18.2
Klebsiella sp. WP8-S18-ESBL-06 Species-level Match Host Order Match	RISB1527	Helicoverpa armigera Order: Lepidoptera	leading to hydrolysis of cellulosic waste into reducing sugars which could be used for the growth of bacteria	0.00%	17.2
Pantoea dispersa Species-level Match Host Order Match	RISB0182	Spodoptera frugiperda Order: Lepidoptera	detoxify benzoxazinoids (secondary metabolites produced by maize) and promote caterpillar growth	0.00%	16.9
Leclercia adecarboxylata Species-level Match Host Order Match	RISB1757	Spodoptera frugiperda Order: Lepidoptera	degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn	0.01%	16.8
Leclercia adecarboxylata Species-level Match Host Order Match	RISB1758	Spodoptera frugiperda Order: Lepidoptera	may influence the metabolization of pesticides in insects	0.01%	16.2
Escherichia coli Species-level Match Host Order Match	RISB2120	Galleria mellonella Order: Lepidoptera	mediate trans-generational immune priming	0.24%	16.1
Citrobacter freundii Species-level Match Host Order Match	RISB2458	Bombyx mori Order: Lepidoptera	degradation of cellulose, xylan, pectin and starch	0.02%	16.0
Staphylococcus Host Order Match	RISB1545	Bombyx mori Order: Lepidoptera	Staphyloxanthin pigment from gut symbiont presented considerable biological properties including in vitro antimicrobial activity against pathogens Staphylococcus aureus, Escherichia coli and Candida albicans; in vitro antioxidant activity by % DPPH free radical scavenging activity	0.03%	15.0
Citrobacter freundii Species-level Match Host Order Match	RISB0506	Plutella xylostella Order: Lepidoptera	None	0.02%	15.0
Staphylococcus Host Order Match	RISB2497	Anticarsia gemmatalis Order: Lepidoptera	allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean	0.03%	14.0
Lactobacillus Host Order Match	RISB0292	Lymantria dispar asiatica Order: Lepidoptera	Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.	0.00%	13.4
Lactobacillus Host Order Match	RISB0715	Spodoptera frugiperda Order: Lepidoptera	Have the function of nutrient absorption, energy metabolism, the plant’s secondary metabolites degradation, insect immunity regulation, and so on	0.00%	12.9
Streptococcus Host Order Match	RISB2625	Galleria mellonella Order: Lepidoptera	suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme	0.01%	12.0
Staphylococcus Host Order Match	RISB2247	Anticarsia gemmatalis Order: Lepidoptera	mitigation of the negative effects of proteinase inhibitors produced by the host plant	0.03%	11.8
Corynebacterium Host Order Match	RISB0531	Helicoverpa armigera Order: Lepidoptera	Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera	0.01%	11.7
Raoultella Host Order Match	RISB1672	Spodoptera frugiperda Order: Lepidoptera	downregulated POX but upregulated trypsin PI in this plant species	0.00%	11.3
Streptococcus Host Order Match	RISB2604	Homona magnanima Order: Lepidoptera	influence the growth of Bacillus thuringiensis in the larvae	0.01%	11.2
Clostridium Host Order Match	RISB0028	Sesamia inferens Order: Lepidoptera	degrade Chlorpyrifos and Chlorantraniliprole in vitro	0.00%	11.1
Corynebacterium Host Order Match	RISB2360	Bombyx mori Order: Lepidoptera	producing lipase in a gut environment	0.01%	10.8
Erwinia Host Order Match	RISB1986	Bombyx mori Order: Lepidoptera	producing cellulase and amylase	0.00%	10.6
Corynebacterium Host Order Match	RISB1909	Brithys crini Order: Lepidoptera	degradation of plant alkaloids	0.01%	10.6
Priestia Host Order Match	RISB0839	Helicoverpa armigera Order: Lepidoptera	producing amylase	0.02%	10.4
Lactobacillus Host Order Match	RISB0617	Spodoptera frugiperda Order: Lepidoptera	degrade amygdalin	0.00%	10.3
Providencia Host Order Match	RISB0242	Spodoptera frugiperda Order: Lepidoptera	None	0.01%	10.0
Listeria monocytogenes Species-level Match	RISB2308	Drosophila melanogaster Order: Diptera	L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.	0.00%	10.0
Lactococcus lactis Species-level Match	RISB0131	Ceratitis capitata Order: Diptera	The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.	0.00%	10.0
Streptomyces sp. WAC00303 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.01%	9.0
Streptomyces sp. T12 Species-level Match	RISB0943	Polybia plebeja Order: Hymenoptera	this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans	0.00%	9.0
Streptomyces sp. WAC00303 Species-level Match	RISB2334	Sirex noctilio Order: Hymenoptera	degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide	0.01%	8.7
Lactococcus lactis Species-level Match	RISB0967	Oulema melanopus Order: Coleoptera	contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.	0.00%	8.6
Paenibacillus sp. FSL R7-0216 Species-level Match	RISB0774	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.12%	8.4
Paenibacillus sp. FSL K6-2441 Species-level Match	RISB0774	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.05%	8.3
Paenibacillus sp. FSL E2-0178 Species-level Match	RISB0774	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.00%	8.3
Lactococcus lactis Species-level Match	RISB0113	Bactrocera dorsalis Order: Diptera	increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities	0.00%	8.0
Escherichia coli Species-level Match	RISB0128	Tribolium castaneum Order: Coleoptera	may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication	0.24%	8.0
Citrobacter freundii Species-level Match	RISB0517	Leptinotarsa decemlineata Order: Coleoptera	affect the cellular and humoral immunity of the insect, increasing its susceptibility to Bacillus thuringiensis var. tenebrionis (morrisoni) (Bt)	0.02%	7.9
Pantoea dispersa Species-level Match	RISB1413	Bactrocera dorsalis Order: Diptera	causing female Bactrocera dorsalis laid more eggs but had shorter lifespan	0.00%	6.5
Kosakonia sp. BYX6 Species-level Match	RISB0810	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-16 oxidation pathway	0.00%	6.4
Pseudomonas chlororaphis Species-level Match	RISB1003	Melolontha melolontha Order: Coleoptera	Against Bacterial Symbionts of Entomopathogenic Nematodes	0.00%	6.1
Lactiplantibacillus plantarum Species-level Match	RISB0674	Drosophila melanogaster Order: Diptera	could effectively inhibit fungal spore germinations	0.00%	6.0
Pantoea dispersa Species-level Match	RISB0381	Thrips tabaci Order: Thysanoptera	gut symbionts are required for their development	0.00%	6.0
Salmonella enterica Species-level Match	RISB0413	Melanaphis sacchari Order: Hemiptera	None	0.04%	5.0
Erwinia	RISB1777	Bactrocera oleae Order: Diptera	a number of genes encoding detoxification and digestive enzymes, indicating a potential association with the ability of B. oleae to cope with green olives. In addition, a number of biological processes seem to be activated in Ca. E. dacicola during the development of larvae in olives, with the most notable being the activation of amino-acid metabolism.	0.00%	5.0
Lactiplantibacillus plantarum Species-level Match	RISB0608	Drosophila melanogaster Order: Diptera	None	0.00%	5.0
Rahnella	RISB1623	Dendroctonus valens Order: Coleoptera	volatiles from predominant bacteria regulate the consumption sequence of carbon sources d-pinitol and d-glucose in the fungal symbiont Leptographium procerum, and appear to alleviate the antagonistic effect from the fungus against RTB larvae	0.00%	4.8
Clostridium	RISB2301	Pyrrhocoris apterus Order: Hemiptera	could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet	0.00%	4.2
Erwinia	RISB1851	Graphosoma Lineatum Order: Hemiptera	it seems that the symbiotic bacterium of G. lineatum might have vital role in provision of essential nutrients necessary to support host survival, development and fecundity.	0.00%	3.5
Raoultella	RISB2226	Leptinotarsa decemlineata Order: Coleoptera	Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)	0.00%	3.3
Pectobacterium	RISB1889	Pseudococcus longispinus Order: Hemiptera	a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids	0.00%	3.3
Leucobacter	RISB0771	Delia antiqua Order: Diptera	showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively	0.00%	3.3
Tsukamurella	RISB1531	Hoplothrips carpathicus Order: Thysanoptera	This genus was identified as dominant in intensively feeding second-stage larvae and suggests a mechanism by which L2 larvae might process cellulose.	0.00%	3.0
Bartonella	RISB1673	Apis mellifera Order: Hymenoptera	a gut symbiont of insects and that the adaptation to blood-feeding insects facilitated colonization of the mammalian bloodstream	0.00%	2.6
Rahnella	RISB1800	Dendroctonus valens Order: Coleoptera	could alleviate or compromise the antagonistic effects of fungi O. minus and L. procerum on RTB larval growth	0.00%	2.2
Rahnella	RISB0741	Dendroctonus ponderosae Order: Coleoptera	R. aquatilis decreased (−)-α-pinene (38%) and (+)-α-pinene (46%) by 40% and 45% (by GC-MS), respectively	0.00%	2.1
Streptococcus	RISB2624	Reticulitermes flavipes Order: Blattodea	can be broken down into substances such as carbon dioxide, ammonia and acetic acid	0.01%	1.7
Leuconostoc	RISB0812	Hypothenemus hampei Order: Coleoptera	might contribute to caffeine breakdown using the C-18 oxidation pathway	0.00%	1.4
Pectobacterium	RISB0798	Pseudoregma bambucicola Order: Hemiptera	may help P. bambucicola feed on the stalks of bamboo	0.00%	1.0
Raoultella	RISB1007	Monochamus alternatus Order: Coleoptera	may help M. alternatus degrade cellulose and pinene	0.00%	1.0
Providencia	RISB1001	Anastrepha obliqua Order: Diptera	improve the sexual competitiveness of males	0.01%	0.9
Providencia	RISB1574	Bactrocera tau Order: Diptera	could attract male and female B. tau	0.01%	0.7
Achromobacter	RISB1869	Aedes aegypti Order: Diptera	gut microbiome	0.01%	0.3
Leucobacter	RISB1876	Aedes aegypti Order: Diptera	gut microbiome	0.00%	0.3
Peribacillus	RISB1877	Aedes aegypti Order: Diptera	gut microbiome	0.00%	0.3
Achromobacter	RISB0383	Aphis gossypii Order: Hemiptera	None	0.01%	0.0
Cupriavidus	RISB0694	Alydus tomentosus Order: Hemiptera	None	0.01%	0.0
Clostridium	RISB1959	Pyrrhocoridae Order: Hemiptera	None	0.00%	0.0
Pectobacterium	RISB1772	Muscidae Order: Diptera	None	0.00%	0.0