SRR11929553 - Ostrinia nubilalis

Basic Information

Run: SRR11929553

Assay Type: WGS

Bioproject: PRJNA636935

Biosample: SAMN15097441

Bytes: 2419489258

Center Name: NANJING AGRICULTURAL UNIVERSITY

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Library Selection: RANDOM

Platform: ILLUMINA

Quality Control Information

Filter Percentage: -

QC Average Length: -

Retained Reads: -

Geographic Information

Country: China

Continent: Asia

Location Name: China: Nanjing

Latitude/Longitude: -

Sample Information

Host: Ostrinia nubilalis

Isolation: -

Biosample Model: Metagenome or environmental

Collection Date: 2019-08-05T10:00:00Z

Taxonomic Classification

Potential Symbionts

Based on our current records database, this section aims to identify potential functional symbionts in this metagenome sample, with scoring based on:

  • Relative abundance in sample
  • Species-level matches with known symbionts
  • Host insect order matches
  • Functional record completeness

Note: Showing top 3 highest scoring records for each species/genus

Symbiont Name Record Host Species Function Abundance
Score
Escherichia coli
RISB1339
Manduca sexta
Order: Lepidoptera
modulate immunity-related gene expression in the infected F0 larvae, and also in their offspring, triggered immune responses in the infected host associated with shifts in both DNA methylation and histone acetylation
25.81%
45.1
Klebsiella pneumoniae
RISB2185
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
23.99%
44.0
Escherichia coli
RISB2120
Galleria mellonella
Order: Lepidoptera
mediate trans-generational immune priming
25.81%
41.6
Klebsiella pneumoniae
RISB2459
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
23.99%
40.0
Klebsiella pneumoniae
RISB1994
Diatraea saccharalis
Order: Lepidoptera
possess cellulose degrading activity
23.99%
39.7
Escherichia coli
RISB0128
Tribolium castaneum
Order: Coleoptera
may produce 4,8-dimethyldecanal (DMD) production that is strongly associated with attraction to females and host pheromone communication
25.81%
33.5
Streptococcus
RISB2625
Galleria mellonella
Order: Lepidoptera
suppress bacteria ingested with food by producing bacteriocin and by releasing a lysozyme like enzyme
19.37%
31.4
Streptococcus
RISB2604
Homona magnanima
Order: Lepidoptera
influence the growth of Bacillus thuringiensis in the larvae
19.37%
30.6
Streptococcus
RISB2624
Reticulitermes flavipes
Order: Blattodea
can be broken down into substances such as carbon dioxide, ammonia and acetic acid
19.37%
21.0
Enterococcus mundtii
RISB1733
Spodoptera littoralis
Order: Lepidoptera
actively secretes a stable class IIa bacteriocin (mundticin KS) against invading bacteria, including the opportunistic pathogens E. faecalis and E. casseliflavus, but not against other gut residents, facilitating the normal development of host gut microbiota
0.01%
20.0
Bacillus sp. CMF12
RISB2181
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.01%
20.0
Bacillus sp. ABP14
RISB2181
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.00%
20.0
Serratia marcescens
RISB2200
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.00%
20.0
Pantoea agglomerans
RISB2198
Scirpophaga incertulas
Order: Lepidoptera
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.00%
20.0
Staphylococcus gallinarum
RISB1545
Bombyx mori
Order: Lepidoptera
Staphyloxanthin pigment from gut symbiont presented considerable biological properties including in vitro antimicrobial activity against pathogens Staphylococcus aureus, Escherichia coli and Candida albicans; in vitro antioxidant activity by % DPPH free radical scavenging activity
0.00%
20.0
Enterococcus mundtii
RISB0476
Spodoptera litura
Order: Lepidoptera
The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.
0.01%
19.8
Serratia marcescens
RISB0477
Spodoptera litura
Order: Lepidoptera
The ingestion of bacteria negatively affected the development and nutritional physiology of insect. The bacteria after successful establishment started degrading the gut wall and invaded the haemocoel thereby causing the death of the host.
0.00%
19.8
Bacillus thuringiensis
RISB0109
Tuta absoluta
Order: Lepidoptera
Individual exposure of B. thuringiensis isolates to P. absoluta revealed high susceptibility of the pest and could potentially be used to develop effective, safe and affordable microbial pesticides for the management of P. absoluta.
0.03%
19.7
Enterococcus gallinarum
RISB2493
Anticarsia gemmatalis
Order: Lepidoptera
allow the adaptation of this insect to plants rich in protease inhibitors, minimizing the potentially harmful consequences of protease inhibitors from some of this insect host plants, such as soybean
0.09%
19.1
Stenotrophomonas maltophilia
RISB1122
Bombyx mori
Order: Lepidoptera
facilitate host resistance against organophosphate insecticides, provides essential amino acids that increase host fitness and allow the larvae to better tolerate the toxic effects of the insecticide.
0.00%
19.0
Serratia marcescens
RISB1426
Maculinea alcon
Order: Lepidoptera
been associated with growth-promoting activity, is capable of producing volatile pyrazines, including 2,5-dimethylpyrazine and 3-ethyl-2,5-dimethylpyrazine, which are used as pheromones by ants
0.00%
18.9
Enterobacter ludwigii
RISB1543
Helicoverpa zea
Order: Lepidoptera
two immunity-related genes glucose oxidase (GOX) and lysozyme (LYZ) were more highly expressed in both salivary glands and midguts compared with MgCl2 solution-treated caterpillars
0.01%
18.6
Lactobacillus sp. PV037
RISB0292
Lymantria dispar asiatica
Order: Lepidoptera
Beauveria bassiana infection-based assays showed that the mortality of non-axenic L. dispar asiatica larvae was significantly higher than that of axenic larvae at 72 h.
0.00%
18.4
Enterobacter sp. Colony194
RISB1392
Spodoptera frugiperda
Order: Lepidoptera
microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects
0.02%
18.2
Enterobacter sp. JBIWA008
RISB1392
Spodoptera frugiperda
Order: Lepidoptera
microbe-mediated assaults by maize defenses on the fall armyworm on the insect digestive and immune system reduced growth and elevated mortality in these insects
0.01%
18.2
Leclercia adecarboxylata
RISB1757
Spodoptera frugiperda
Order: Lepidoptera
degradation of lambda-cyhalothrin, deltamethrin, chlorpyrifos ethyl, lufenuron and spinosyn
0.01%
16.8
Stenotrophomonas maltophilia
RISB1123
Bombyx mori
Order: Lepidoptera
confer a significant fitness advantage via nutritional (amino acids) upgrading
0.00%
16.6
Leclercia adecarboxylata
RISB1758
Spodoptera frugiperda
Order: Lepidoptera
may influence the metabolization of pesticides in insects
0.01%
16.2
Citrobacter freundii
RISB2458
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.11%
16.1
Citrobacter freundii complex sp. CFNIH3
RISB2458
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.01%
16.0
Citrobacter freundii complex sp. CFNIH2
RISB2458
Bombyx mori
Order: Lepidoptera
degradation of cellulose, xylan, pectin and starch
0.00%
16.0
Stenotrophomonas maltophilia
RISB1998
Diatraea saccharalis
Order: Lepidoptera
possess cellulose degrading activity
0.00%
15.7
Cedecea lapagei
RISB0504
Plutella xylostella
Order: Lepidoptera
None
0.00%
15.0
Mammaliicoccus
RISB0075
Bombyx mori
Order: Lepidoptera
could produce a secreted chitinolytic lysozyme (termed Msp1) to damage fungal cell walls,completely inhibit the spore germination of fungal entomopathogens Metarhizium robertsii and Beauveria bassiana
0.00%
14.0
Photorhabdus
RISB2532
Manduca sexta
Order: Lepidoptera
produces a small-molecule antibiotic (E)-1,3-dihydroxy-2-(isopropyl)-5-(2-phenylethenyl)benzene (ST) that also acts as an inhibitor of phenoloxidase (PO) in the insect host Manduca sexta.
0.00%
13.7
Bifidobacterium
RISB0616
Spodoptera frugiperda
Order: Lepidoptera
Strain wkB204 grew in the presence of amygdalin as the sole carbon source, suggesting that this strain degrades amygdalin and is not susceptible to the potential byproducts
0.00%
13.4
Photorhabdus
RISB2573
Manduca sexta
Order: Lepidoptera
the bacteria are symbiotic with entomopathogenic nematodes but become pathogenic on release from the nematode into the insect blood system
0.00%
12.8
Bacteroides
RISB0090
Hyphantria cunea
Order: Lepidoptera
enhance the compatibility of invasive pests to new hosts and enable more rapid adaptation to new habitats.
0.51%
12.6
Xenorhabdus
RISB1372
Spodoptera frugiperda
Order: Lepidoptera
the products of the symbiont gene cluster inhibit Spodoptera frugiperda phenoloxidase activity
0.00%
11.9
Corynebacterium
RISB0531
Helicoverpa armigera
Order: Lepidoptera
Corynebacterium sp. 2-TD, mediates the toxicity of the 2-tridecanone to H. armigera
0.01%
11.7
Corynebacterium
RISB2360
Bombyx mori
Order: Lepidoptera
producing lipase in a gut environment
0.01%
10.8
Corynebacterium
RISB1909
Brithys crini
Order: Lepidoptera
degradation of plant alkaloids
0.01%
10.6
Priestia
RISB0839
Helicoverpa armigera
Order: Lepidoptera
producing amylase
0.04%
10.4
Pantoea agglomerans
RISB2197
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.00%
10.0
Staphylococcus gallinarum
RISB0945
Callosobruchus maculatus
Order: Coleoptera
The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine; A carbohydrate-active enzyme search revealed that the genome codes for a number of digestive enzymes, reflecting the nutritional ecology of C. maculatus
0.00%
10.0
Lactococcus lactis
RISB0131
Ceratitis capitata
Order: Diptera
The intestinal microbiota structure was significantly influenced by the probiotic treatment while still maintaining a stable core dominant community of Enterobacteriacea. The  colony with these microbiome had the most improved potential functions in terms of gut microbes as well as the carbohydrates active enzymes most improved potential functions.
0.00%
10.0
Listeria monocytogenes
RISB2308
Drosophila melanogaster
Order: Diptera
L. monocytogenes infection disrupts host energy metabolism by depleting energy stores (triglycerides and glycogen) and reducing metabolic pathway activity (beta-oxidation and glycolysis). The infection affects antioxidant defense by reducing uric acid levels and alters amino acid metabolism. These metabolic changes are accompanied by melanization, potentially linked to decreased tyrosine levels.
0.00%
10.0
Clostridium sp. OS1-26
RISB2301
Pyrrhocoris apterus
Order: Hemiptera
could play an important role for the insect by degrading complex dietary components, providing nutrient supplementation, or detoxifying noxious chemicals (e.g. cyclopropenoic fatty acids or gossypol) in the diet
0.00%
9.2
Streptomyces sp. WAC00303
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.02%
9.0
Streptomyces sp. T12
RISB0943
Polybia plebeja
Order: Hymenoptera
this bacterium produces antimicrobial compounds that are active against Hirsutella citriformis, a natural fungal enemy of its host, and the human pathogens Staphylococcus aureus and Candida albicans
0.00%
9.0
Acinetobacter pittii
RISB1977
Blattella germanica
Order: Blattodea
gut microbiota contributes to production of VCAs that act as fecal aggregation agents and that cockroaches discriminate among the complex odors that emanate from a diverse microbial community
0.00%
8.8
Streptomyces sp. WAC00303
RISB2334
Sirex noctilio
Order: Hymenoptera
degrading woody substrates and that such degradation may assist in nutrient acquisition by S. noctilio, thus contributing to its ability to be established in forested habitats worldwide
0.02%
8.7
Lactococcus lactis
RISB0967
Oulema melanopus
Order: Coleoptera
contribute to the decomposition of complex carbohydrates, fatty acids, or polysaccharides in the insect gut. It might also contribute to the improvement of nutrient availability.
0.00%
8.6
Raoultella sp. XY-1
RISB2226
Leptinotarsa decemlineata
Order: Coleoptera
Colorado potato beetle (Leptinotarsa decemlineata) larvae exploit bacteria in their oral secretions to suppress antiherbivore defenses in tomato (Solanum lycopersicum)
0.00%
8.3
Morganella morganii
RISB0772
Delia antiqua
Order: Diptera
showed significant volatile inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.03%
8.3
Paenibacillus sp. FSL R7-0216
RISB0774
Delia antiqua
Order: Diptera
showed significant contact inhibition activity against fungal entomopathogen Fusarium moniliforme, Botryosphaeria dothidea and both Fusarium oxysporum respectively
0.00%
8.3
Lactococcus lactis
RISB0113
Bactrocera dorsalis
Order: Diptera
increase the resistance of B. dorsalis to β-cypermethrin by regulating cytochrome P450 (P450) enzymes and α-glutathione S-transferase (GST) activities
0.00%
8.0
Morganella morganii
RISB0008
Phormia regina
Order: Diptera
deterred oviposition by female stable flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.03%
8.0
Blattabacterium cuenoti
RISB0133
Panesthiinae
Order: Blattodea
enables hosts to subsist on a nutrient-poor diet; endosymbiont genome erosions are associated with repeated host transitions to an underground life
0.00%
7.9
Morganella morganii
RISB1867
Costelytra zealandica
Order: Coleoptera
Female beetles were previously shown to use phenol as their sex pheromone produced by symbiotic bacteria in the accessory or colleterial gland
0.03%
7.9
Staphylococcus gallinarum
RISB0946
Callosobruchus maculatus
Order: Coleoptera
The strain encodes complete biosynthetic pathways for the production of B vitamins and amino acids, including tyrosine
0.00%
7.4
Pantoea agglomerans
RISB2579
Schistocerca gregaria
Order: Orthoptera
produces an antifungal and antibacterial molecule serving as antimicrobial defense against gut pathogens
0.00%
7.1
Kosakonia sp. BYX6
RISB0810
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-16 oxidation pathway
0.00%
6.4
Paenibacillus sp. FSL R7-0216
RISB0813
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-9 oxidation pathway
0.00%
6.4
Pseudomonas chlororaphis
RISB1003
Melolontha melolontha
Order: Coleoptera
Against Bacterial Symbionts of Entomopathogenic Nematodes
0.00%
6.1
Lactiplantibacillus plantarum
RISB0674
Drosophila melanogaster
Order: Diptera
could effectively inhibit fungal spore germinations
0.00%
6.0
Lysinibacillus fusiformis
RISB1417
Psammotermes hypostoma
Order: Blattodea
isolates showed significant cellulolytic activity
0.00%
6.0
Salmonella enterica
RISB0413
Melanaphis sacchari
Order: Hemiptera
None
0.80%
5.8
Cedecea lapagei
RISB1570
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.00%
5.7
Raoultella sp. XY-1
RISB1575
Bactrocera tau
Order: Diptera
could attract male and female B. tau
0.00%
5.7
Blattabacterium cuenoti
RISB0518
Cryptocercus punctulatus
Order: Blattodea
collaborative arginine biosynthesis
0.00%
5.7
Paenibacillus sp. FSL R7-0216
RISB2098
Aedes aegypti
Order: Diptera
axenic larvae cannot develop
0.00%
5.6
Blattabacterium cuenoti
RISB0093
Blattella germanica
Order: Blattodea
obligate endosymbiont
0.00%
5.4
Lysinibacillus fusiformis
RISB1066
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.00%
5.2
Bifidobacterium
RISB0174
Apis mellifera
Order: Hymenoptera
Bifidobacterium provides complementary demethylation service to promote Gilliamella growth on methylated homogalacturonan, an enriched polysaccharide of pectin. In exchange, Gilliamella shares digestive products with Bifidobacterium, through which a positive interaction is established
0.00%
5.0
Lactiplantibacillus plantarum
RISB0608
Drosophila melanogaster
Order: Diptera
None
0.00%
5.0
Pseudocitrobacter corydidari
RISB0696
Corydidarum magnifica
Order: Blattodea
None
0.00%
5.0
Trabulsiella
RISB2201
Termitidae
Order: Blattodea
The ability of these arthropods to feed on wood, foliage and detritus is likely to involve catalysis by different types of cellulases/hemicellulases that are secreted by gut microbiota to digest the structural and recalcitrant lignocellulosic residues in their foods.
0.00%
5.0
Candidatus Regiella
RISB1370
Sitobion avenae
Order: Hemiptera
Regiella infection decreased the intrinsic rate of increase (rm) of aphids at 25 °C and 28 °C. However, at 31 °C, the effect of Regiella on the rm varied depending on the aphid genotype and density. Thus, the negative effects of this endosymbiont on its host were environmentally dependent.
0.00%
5.0
Candidatus Regiella
RISB1819
Sitobion avenae
Order: Hemiptera
In R. insecticola-infected aphid lines, there were increases in plasticities for developmental times of first and second instar nymphs and for fecundity, showing novel functional roles of bacterial symbionts in plant-insect interactions.
0.00%
4.7
Candidatus Regiella
RISB1363
Sitobion avenae
Order: Hemiptera
R. insecticola-infected aphids were more predated by the ladybird Hippodamia variegata irrespective of host plants and did not improve defences against coccinellid predators or metabolic rates on any host plants
0.00%
4.2
Sphingobium
RISB1837
Dendroctonus valens
Order: Coleoptera
It can trongly degrade naringenin, and pinitol, the main soluble carbohydrate of P. tabuliformis, is retained in L. procerum-infected phloem and facilitate naringenin biodegradation by the microbiotas.
0.00%
4.0
Symbiopectobacterium
RISB1889
Pseudococcus longispinus
Order: Hemiptera
a nested symbiotic arrangement, where one bacterium lives inside another bacterium,occurred in building the mosaic metabolic pathways seen in mitochondria and plastids
0.00%
3.3
Yokenella
RISB1492
Nezara viridula
Order: Hemiptera
help stinkbugs to feed on soybean developing seeds in spite of its chemical defenses by degrading isoflavonoids and deactivate soybean protease inhibitors
0.00%
3.1
Bacteroides
RISB0256
Leptocybe invasa
Order: Hymenoptera
Differences in Male-Killing Rickettsia Bacteria between Lineages of the Invasive Gall-Causing Pest Leptocybe invasa
0.51%
2.8
Exiguobacterium
RISB0007
Phormia regina
Order: Diptera
prompted oviposition by flies; The flies' oviposition decisions appear to be guided by bacteria-derived semiochemicals as the bacteria
0.01%
2.7
Bacteroides
RISB1183
Oryzaephilus surinamensis
Order: Coleoptera
supplement precursors for the cuticle synthesis and thereby enhance desiccation resistance of its host
0.51%
2.6
Yersinia
RISB0492
Cimex hemipterus
Order: Hemiptera
the disruption of the abundant Yersinia possibly could be related to the enhanced susceptibility towards the insecticides
0.00%
2.4
Xenorhabdus
RISB2270
Acyrthosiphon pisum
Order: Hemiptera
have the gene PIN1 encoding the protease inhibitor protein against aphids
0.00%
1.5
Nostoc
RISB0812
Hypothenemus hampei
Order: Coleoptera
might contribute to caffeine breakdown using the C-18 oxidation pathway
0.00%
1.4
Actinomyces
RISB1234
Hermetia illucens
Order: Diptera
provides the tools for degrading of a broad range of substrates
0.04%
1.3
Photorhabdus
RISB0532
Drosophila melanogaster
Order: Diptera
produces toxin complex (Tc) toxins as major virulence factors
0.00%
1.2
Cronobacter
RISB0247
Tenebrio molitor
Order: Coleoptera
may be indirectly involved in the digestion of PE
0.01%
1.0
Exiguobacterium
RISB0582
Aleurodicus rugioperculatus
Order: Hemiptera
may indirectly affect whitefly oviposition
0.01%
0.9
Trabulsiella
RISB1685
Melolontha hippocastani
Order: Coleoptera
Involved in cellulose degradation
0.00%
0.7
Exiguobacterium
RISB1152
Tenebrio molitor
Order: Coleoptera
degrading plastics
0.01%
0.4
Sphingobium
RISB1880
Aedes aegypti
Order: Diptera
gut microbiome
0.00%
0.3
Achromobacter
RISB1869
Aedes aegypti
Order: Diptera
gut microbiome
0.00%
0.3
Peribacillus
RISB1877
Aedes aegypti
Order: Diptera
gut microbiome
0.00%
0.3
Kluyvera
RISB1064
Oryctes rhinoceros
Order: Coleoptera
gut microbe
0.01%
0.2
Cupriavidus
RISB0694
Alydus tomentosus
Order: Hemiptera
None
0.02%
0.0
Bifidobacterium
RISB1944
Apis cerana
Order: Hymenoptera
None
0.00%
0.0
Yersinia
RISB0407
Anaphes nitens
Order: Hymenoptera
None
0.00%
0.0
Achromobacter
RISB0383
Aphis gossypii
Order: Hemiptera
None
0.00%
0.0
Candidatus Profftia
RISB1664
Adelgidae
Order: Hemiptera
None
0.00%
0.0
Vagococcus
RISB0042
Aldrichina grahami
Order: Diptera
None
0.00%
0.0

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