Hypothenemus hampei

coffee borer beetle or coffee berry borer

Order

Coleoptera

Family

Curculionidae

Genus

Hypothenemus
18 Symbionts
Associated
0 Metagenomes
Sequenced
0 Amplicons
Available
Hypothenemus hampei
Image source: L. Shyamal@BY-SA

Hypothenemus hampei is a small beetle native to Africa. It is among the most harmful pests to coffee crops across the world where coffee is cultivated.Spanish common names of the insect include barrenador del café, gorgojo del café, and broca del café.

Host Genome

Scaffold
Genome ID Level BUSCO Assessment
GCA_013372445.1 Scaffold
C:95.2%[S:90.8%,D:4.4%],F:2.7%,M:2.1%,n:1367

Download Genome Files

Genome Assembly
.genome.fa
Protein Sequences
.pep.fa
CDS Sequences
.cds.fa
Genome Annotation
.gff3

Related Symbionts

18 records

Symbiont records associated with Hypothenemus hampei

Classification Function Function Tags Reference
Pseudomonas fulva

Pseudomonadota
Bacteria

Pseudomonas fulva processed a gene coding for one subunit of caffeine demethylase, and its reinstatement in germ-free Hypothenemus hampei degraded al…
detoxification enzymes
Pseudomonas fulva

Pseudomonadota
Bacteria

Pseudomonas fulva shows caffeine-degrading activity, and its inoculation into antibiotic-treated larvae restored the deficiency and recovered from in…
detoxification enzymes
Stenotrophomonas sp.

Pseudomonadota
Bacteria

Stenotrophomonas sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Acinetobacter sp.

Pseudomonadota
Bacteria

Acinetobacter sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Bacteria

Paenibacillus sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Bacteria

Enterococcus sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Bacteria

Lactococcus sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Bacteria

Leuconostoc sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Pseudomonas sp.

Pseudomonadota
Bacteria

Pseudomonas sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Klebsiella sp.

Pseudomonadota
Bacteria

Klebsiella sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Kosakonia sp.

Pseudomonadota
Bacteria

Kosakonia sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Bacillus sp.

Bacillota
Bacteria

Bacillus sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Delftia sp.

Pseudomonadota
Bacteria

Delftia sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Erwinia sp.

Pseudomonadota
Bacteria

Erwinia sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Pantoea sp.

Pseudomonadota
Bacteria

Pantoea sp. might contribute to caffeine breakdown using the C-8 oxidation pathway (detoxification) in Hypothenemus hampei.
detoxification enzymes
Pseudomonas fulva

Pseudomonadota
Bacteria

Pseudomonas fulva aids in the detoxification of plant secondary compounds (caffeine) in Hypothenemus hampei.
detoxification enzymes
Bacteria

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Bacteria

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Back to Table

Metagenome Information

0 records

Metagenome sequencing data associated with Hypothenemus hampei

Run Platform Location Date BioProject

No metagenomes found

No metagenome records associated with this host species.

Amplicon Information

0 records

Amplicon sequencing data associated with Hypothenemus hampei

Run Classification Platform Location Environment

No amplicons found

No amplicon records associated with this host species.

Related Articles

3 records

Research articles related to Hypothenemus hampei

Title Authors Journal Year DOI
Cultivation and Genome Sequencing of Bacteria Isolated From the Coffee Berry Borer (Hypothenemus hampei), With Emphasis on the Role of Caffeine Degradation
Vega, FE; Emche, S; Shao, J ... Aoki, S; Maul, JE
FRONTIERS IN MICROBIOLOGY
2021
 10.3389/fmicb.2021.644768
Structure and Dynamics of the Gut Bacterial Community Across the Developmental Stages of the Coffee Berry Borer, Hypothenemus hampei
Mejía-Alvarado, FS; Ghneim-Herrera, T; Góngora, CE; Benavides, P; Navarro-Escalante, L
FRONTIERS IN MICROBIOLOGY
2021
 10.3389/fmicb.2021.639868
High diversity and variability in the bacterial microbiota of the coffee berry borer (Coleoptera: Curculionidae), with emphasis on Wolbachia
Mariño, YA; Ospina, OE; Rodrigues, JCV; Bayman, P
JOURNAL OF APPLIED MICROBIOLOGY
2018
 10.1111/jam.13768