SRR9993542 - None

Basic Information

Run: SRR9993542

Assay Type: AMPLICON

Biosample: SAMN12597578

Bytes: 9823571

Center Name: NATIONAL TAIWAN UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: SINGLE

Bioproject: PRJNA560693

Geographic Information

Country: Taiwan

Continent: Asia

Location Name: Taiwan: Chiayi

Latitude/Longitude: 23.444897 N 120.503178 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2019-05-18

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9993542
9.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 70
Fermentation 49
Aerobic_Chemoheterotrophy 14
Human_Associated 11
Animal_Parasites_Or_Symbionts 11
Human_Gut 6
Mammal_Gut 6
Human_Pathogens_All 5
Aromatic_Compound_Degradation 4
Nitrate_Respiration 4
Nitrate_Reduction 4
Nitrogen_Respiration 4
Xylanolysis 3
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Sulfate_Respiration 2
Respiration_Of_Sulfur_Compounds 2
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1
Methylotrophy 1
Dark_Hydrogen_Oxidation 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
Plastic_Degradation 1
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