SRR9993360 - Culex

Basic Information

Run: SRR9993360

Assay Type: AMPLICON

Biosample: SAMN12595132

Bytes: 20377006

Center Name: NATIONAL TAIWAN UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA560667

Geographic Information

Country: Taiwan

Continent: Asia

Location Name: Taiwan: Taipei

Latitude/Longitude: 25.1298217 N 121.57069 E

Sample Information

Host: Culex

Isolation: -

Biosample Model: -

Collection Date: 2018-09-30

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9993360
19.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 48
Aerobic_Chemoheterotrophy 44
Fermentation 5
Nitrogen_Fixation 3
Ureolysis 3
Dark_Oxidation_Of_Sulfur_Compounds 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Cellulolysis 1
Xylanolysis 1
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Nonphotosynthetic_Cyanobacteria 1
Photoheterotrophy 1
Phototrophy 1
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