SRR9993314 - Tripteroides

Basic Information

Run: SRR9993314

Assay Type: AMPLICON

Biosample: SAMN12595141

Bytes: 24722664

Center Name: NATIONAL TAIWAN UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA560667

Geographic Information

Country: Taiwan

Continent: Asia

Location Name: Taiwan: Taipei

Latitude/Longitude: 25.1298217 N 121.57069 E

Sample Information

Host: Tripteroides

Isolation: -

Biosample Model: -

Collection Date: 2018-09-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9993314

23.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 40

Chemoheterotrophy

Aerobic_Chemoheterotrophy 21

Aerobic_Chemoheterotrophy

Fermentation 19

Fermentation

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Nitrogen_Fixation 5

Nitrogen_Fixation

Human_Associated 4

Human_Associated

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Nitrate_Reduction 2

Nitrate_Reduction

Intracellular_Parasites 2

Intracellular_Parasites

Phototrophy 2

Phototrophy

Ureolysis 2

Ureolysis

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfur_Respiration 1

Sulfur_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

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