SRR9993012 - Heizmannia

Basic Information

Run: SRR9993012

Assay Type: AMPLICON

Biosample: SAMN12594724

Bytes: 24750420

Center Name: NATIONAL TAIWAN UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA560667

Geographic Information

Country: Taiwan

Continent: Asia

Location Name: Taiwan: Yuanshan

Latitude/Longitude: 24.762085 N 121.5826 E

Sample Information

Host: Heizmannia

Isolation: -

Biosample Model: -

Collection Date: 2018-06-23

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9993012

23.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42

Chemoheterotrophy

Aerobic_Chemoheterotrophy 34

Aerobic_Chemoheterotrophy

Methylotrophy 6

Methylotrophy

Nitrogen_Fixation 5

Nitrogen_Fixation

Fermentation 5

Fermentation

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Photoheterotrophy 5

Photoheterotrophy

Phototrophy 5

Phototrophy

Ureolysis 4

Ureolysis

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 3

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Hydrogenotrophic_Methanogenesis 3

Hydrogenotrophic_Methanogenesis

Methanogenesis 3

Methanogenesis

Methanol_Oxidation 3

Methanol_Oxidation

Intracellular_Parasites 3

Intracellular_Parasites

Methanotrophy 2

Methanotrophy

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Nitrate_Respiration 1

Nitrate_Respiration

Nitrate_Reduction 1

Nitrate_Reduction

Nitrogen_Respiration 1

Nitrogen_Respiration

Back to Amplicons List

Back to Table