SRR9593338 - Manihot esculenta

Basic Information

Run: SRR9593338

Assay Type: AMPLICON

Biosample: SAMN12135053

Bytes: 73383278

Center Name: ICAR-CENTRAL TUBER CROPS RESEARCH INSTITUTE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA550538

Geographic Information

Country: India

Continent: Asia

Location Name: India:Thiruvananthapuram

Latitude/Longitude: 8.5471 N 76.9139 E

Sample Information

Host: Manihot esculenta

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9593338
70.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Methanol_Oxidation 1
Methylotrophy 1
Ureolysis 1
Chemoheterotrophy 1
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