SRR9113047 - Solanum tuberosum

Basic Information

Run: SRR9113047

Assay Type: AMPLICON

Biosample: SAMN11834754

Bytes: 160684403

Center Name: FUJIAN AGRICULTURE AND FORESTRY UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Ion S5 XL

Library Layout: SINGLE

Bioproject: PRJNA544354

Geographic Information

Country: China

Continent: Asia

Location Name: China: Xinjiang

Sample Information

Host: Solanum tuberosum

Isolation: -

Biosample Model: -

Collection Date: 2018-07-20

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9113047

153.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 176

Chemoheterotrophy

Fermentation 115

Fermentation

Aerobic_Chemoheterotrophy 61

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 39

Animal_Parasites_Or_Symbionts

Human_Associated 32

Human_Associated

Nitrate_Reduction 23

Nitrate_Reduction

Human_Gut 22

Human_Gut

Mammal_Gut 22

Mammal_Gut

Human_Pathogens_All 12

Human_Pathogens_All

Aromatic_Compound_Degradation 12

Aromatic_Compound_Degradation

Xylanolysis 8

Xylanolysis

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Ureolysis 5

Ureolysis

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Phototrophy 4

Phototrophy

Methylotrophy 3

Methylotrophy

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Methanol_Oxidation 2

Methanol_Oxidation

Sulfate_Respiration 2

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Nitrogen_Fixation 2

Nitrogen_Fixation

Human_Pathogens_Diarrhea 2

Human_Pathogens_Diarrhea

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Methanotrophy 1

Methanotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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