SRR9111636 - Musca domestica

Basic Information

Run: SRR9111636

Assay Type: AMPLICON

Biosample: SAMN11801768

Bytes: 6406582

Center Name: KU LEUVEN / VIB

Classification: 16S or ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA544040

Geographic Information

Country: Rwanda

Continent: Africa

Location Name: Rwanda:Huye

Latitude/Longitude: 2.607050 S 29.747836 E

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: 2017-08-30

Host Sex: female

Environmental Information

Broad Scale: animal-associated environment [ENVO:01001002]

Local Scale: host habitat:Hospital

Medium: external surface

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9111636
6.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 53
Fermentation 28
Aerobic_Chemoheterotrophy 24
Nitrate_Reduction 8
Animal_Parasites_Or_Symbionts 5
Dark_Hydrogen_Oxidation 4
Human_Gut 4
Human_Associated 4
Mammal_Gut 4
Aromatic_Compound_Degradation 4
Methanogenesis_By_Co2_Reduction_With_H2 2
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Methanol_Oxidation 2
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Nitrite_Respiration 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Chitinolysis 1
Nitrogen_Fixation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
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