SRR9111524 - Musca domestica

Basic Information

Run: SRR9111524

Assay Type: AMPLICON

Biosample: SAMN11801776

Bytes: 8444186

Center Name: KU LEUVEN / VIB

Classification: 16S or ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA544040

Geographic Information

Country: Rwanda

Continent: Africa

Location Name: Rwanda:Huye

Latitude/Longitude: 2.604755 S 29.741463 E

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: 2017-09-01

Host Sex: male

Environmental Information

Broad Scale: animal-associated environment [ENVO:01001002]

Local Scale: host habitat:Hospital

Medium: external surface

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9111524
8.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 61
Aerobic_Chemoheterotrophy 51
Nitrate_Reduction 14
Methanol_Oxidation 11
Methylotrophy 11
Nitrate_Denitrification 11
Nitrite_Denitrification 11
Denitrification 11
Dark_Hydrogen_Oxidation 11
Nitrite_Respiration 11
Aromatic_Compound_Degradation 11
Nitrate_Respiration 11
Nitrogen_Respiration 11
Fermentation 9
Chitinolysis 1
Nitrogen_Fixation 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Predatory_Or_Exoparasitic 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
Ureolysis 1
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