SRR9111344 - Musca domestica

Basic Information

Run: SRR9111344

Assay Type: AMPLICON

Biosample: SAMN11801837

Bytes: 19761153

Center Name: KU LEUVEN / VIB

Classification: 16S or ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA544040

Geographic Information

Country: Rwanda

Continent: Africa

Location Name: Rwanda:Huye

Latitude/Longitude: 2.603652 S 29.742447 E

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: 2017-09-05

Host Sex: male

Environmental Information

Broad Scale: animal-associated environment [ENVO:01001002]

Local Scale: host habitat:Home

Medium: external surface

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9111344

18.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 215

Chemoheterotrophy

Aerobic_Chemoheterotrophy 170

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 50

Aromatic_Compound_Degradation

Fermentation 31

Fermentation

Nitrate_Reduction 20

Nitrate_Reduction

Nitrate_Respiration 13

Nitrate_Respiration

Nitrogen_Respiration 13

Nitrogen_Respiration

Methanol_Oxidation 12

Methanol_Oxidation

Methylotrophy 12

Methylotrophy

Nitrite_Respiration 10

Nitrite_Respiration

Nitrate_Denitrification 9

Nitrate_Denitrification

Nitrite_Denitrification 9

Nitrite_Denitrification

Denitrification 9

Denitrification

Dark_Hydrogen_Oxidation 9

Dark_Hydrogen_Oxidation

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Ureolysis 5

Ureolysis

Aerobic_Ammonia_Oxidation 4

Aerobic_Ammonia_Oxidation

Nitrification 4

Nitrification

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Phototrophy 3

Phototrophy

Thiosulfate_Respiration 2

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Chitinolysis 2

Chitinolysis

Manganese_Oxidation 2

Manganese_Oxidation

Human_Pathogens_All 2

Human_Pathogens_All

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Sulfur_Respiration 1

Sulfur_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Xylanolysis 1

Xylanolysis

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Oil_Bioremediation 1

Oil_Bioremediation

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Photoheterotrophy 1

Photoheterotrophy

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