SRR9111153 - Musca domestica

Basic Information

Run: SRR9111153

Assay Type: AMPLICON

Biosample: SAMN11802228

Bytes: 69284586

Center Name: KU LEUVEN / VIB

Classification: 16S or ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA544040

Geographic Information

Country: Rwanda

Continent: Africa

Location Name: Rwanda:Kibilizi

Latitude/Longitude: 2.648569 S 29.783236 E

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: 2017-09-06

Host Sex: male

Environmental Information

Broad Scale: animal-associated environment [ENVO:01001002]

Local Scale: host habitat:Hospital

Medium: internal compartment

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9111153
66.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 216
Aerobic_Chemoheterotrophy 142
Fermentation 73
Nitrate_Reduction 47
Aromatic_Compound_Degradation 27
Methylotrophy 24
Nitrate_Respiration 24
Nitrogen_Respiration 24
Methanol_Oxidation 22
Nitrate_Denitrification 22
Nitrite_Denitrification 22
Denitrification 22
Dark_Hydrogen_Oxidation 22
Nitrite_Respiration 22
Animal_Parasites_Or_Symbionts 16
Human_Associated 13
Ureolysis 9
Human_Pathogens_All 8
Human_Gut 6
Mammal_Gut 6
Manganese_Oxidation 5
Hydrocarbon_Degradation 3
Intracellular_Parasites 3
Phototrophy 3
Methanotrophy 2
Chitinolysis 2
Nitrogen_Fixation 2
Photosynthetic_Cyanobacteria 2
Oxygenic_Photoautotrophy 2
Photoautotrophy 2
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Xylanolysis 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_Diarrhea 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Aerobic_Anoxygenic_Phototrophy 1
Photoheterotrophy 1
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