SRR9098392 - not applicable

Basic Information

Run: SRR9098392

Assay Type: AMPLICON

Biosample: SAMN11791917

Bytes: 22185325

Center Name: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA543947

Quality Control Information

Filter Percentage: 0.0415

QC Average Length: 250

Retained Reads: 153440

Geographic Information

Country: China

Continent: Asia

Location Name: China: Beijing

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2013-05-19

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9098392

21.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 66

Chemoheterotrophy

Aerobic_Chemoheterotrophy 41

Aerobic_Chemoheterotrophy

Fermentation 20

Fermentation

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 14

Nitrate_Reduction

Human_Associated 11

Human_Associated

Human_Pathogens_All 6

Human_Pathogens_All

Human_Gut 6

Human_Gut

Mammal_Gut 6

Mammal_Gut

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Methylotrophy 5

Methylotrophy

Ureolysis 5

Ureolysis

Methanol_Oxidation 4

Methanol_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Phototrophy 2

Phototrophy

Methanotrophy 1

Methanotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Xylanolysis 1

Xylanolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Invertebrate_Parasites 1

Invertebrate_Parasites

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Plant_Pathogen 1

Plant_Pathogen

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

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