SRR9098372 - not applicable

Basic Information

Run: SRR9098372

Assay Type: AMPLICON

Biosample: SAMN11791874

Bytes: 21603556

Center Name: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA543947

Quality Control Information

Filter Percentage: 0.0483

QC Average Length: 250

Retained Reads: 152418

Geographic Information

Country: China

Continent: Asia

Location Name: China: Ningxia, Jingyuan

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2008-07-09

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9098372

20.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 15

Chemoheterotrophy

Aerobic_Chemoheterotrophy 9

Aerobic_Chemoheterotrophy

Nitrate_Reduction 6

Nitrate_Reduction

Fermentation 4

Fermentation

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Nitrogen_Fixation 2

Nitrogen_Fixation

Ureolysis 2

Ureolysis

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Human_Pathogens_All 1

Human_Pathogens_All

Human_Associated 1

Human_Associated

Animal_Parasites_Or_Symbionts 1

Animal_Parasites_Or_Symbionts

Plant_Pathogen 1

Plant_Pathogen

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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