SRR9098316 - not applicable

Basic Information

Run: SRR9098316

Assay Type: AMPLICON

Biosample: SAMN11791897

Bytes: 22243034

Center Name: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA543947

Quality Control Information

Filter Percentage: 0.0375

QC Average Length: 250

Retained Reads: 154022

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hainan, Mt. Limu

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2010-04-06

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9098316

21.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 88

Chemoheterotrophy

Aerobic_Chemoheterotrophy 44

Aerobic_Chemoheterotrophy

Fermentation 40

Fermentation

Nitrate_Reduction 16

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 15

Animal_Parasites_Or_Symbionts

Human_Associated 9

Human_Associated

Ureolysis 6

Ureolysis

Human_Pathogens_All 5

Human_Pathogens_All

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Nitrogen_Fixation 4

Nitrogen_Fixation

Xylanolysis 4

Xylanolysis

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Nitrite_Respiration 3

Nitrite_Respiration

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Chitinolysis 2

Chitinolysis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Cellulolysis 2

Cellulolysis

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Plant_Pathogen 1

Plant_Pathogen

Iron_Respiration 1

Iron_Respiration

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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