SRR9087006 - Rhodnius pallescens

Basic Information

Run: SRR9087006

Assay Type: AMPLICON

Biosample: SAMN11673107

Bytes: 13945231

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA543522

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Veraguas

Latitude/Longitude: 8.3246 N 81.0383 W

Sample Information

Host: Rhodnius pallescens

Isolation: -

Biosample Model: -

Collection Date: 2017-07-10

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9087006

13.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 98

Chemoheterotrophy

Aerobic_Chemoheterotrophy 64

Aerobic_Chemoheterotrophy

Fermentation 34

Fermentation

Nitrate_Reduction 8

Nitrate_Reduction

Human_Associated 7

Human_Associated

Animal_Parasites_Or_Symbionts 7

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Human_Pathogens_All 5

Human_Pathogens_All

Ureolysis 5

Ureolysis

Xylanolysis 4

Xylanolysis

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Nitrogen_Fixation 1

Nitrogen_Fixation

Cellulolysis 1

Cellulolysis

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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