SRR9087003 - Rhodnius pallescens

Basic Information

Run: SRR9087003

Assay Type: AMPLICON

Biosample: SAMN11673112

Bytes: 70009354

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA543522

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Veraguas

Latitude/Longitude: 8.3245 N 81.0383 W

Sample Information

Host: Rhodnius pallescens

Isolation: -

Biosample Model: -

Collection Date: 2017-07-10

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9087003
66.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 405
Aerobic_Chemoheterotrophy 284
Fermentation 129
Aromatic_Compound_Degradation 52
Human_Associated 30
Animal_Parasites_Or_Symbionts 30
Human_Gut 20
Mammal_Gut 20
Nitrate_Reduction 18
Human_Pathogens_All 10
Ureolysis 7
Nitrogen_Fixation 6
Nitrate_Respiration 4
Nitrogen_Respiration 4
Methanol_Oxidation 3
Methylotrophy 3
Human_Pathogens_Nosocomia 3
Xylanolysis 2
Intracellular_Parasites 2
Dark_Oxidation_Of_Sulfur_Compounds 1
Predatory_Or_Exoparasitic 1
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