SRR9086962 - Rhodnius pallescens

Basic Information

Run: SRR9086962

Assay Type: AMPLICON

Biosample: SAMN11673119

Bytes: 14055113

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA543522

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Veraguas

Latitude/Longitude: 8.3098 N 81.0308 W

Sample Information

Host: Rhodnius pallescens

Isolation: -

Biosample Model: -

Collection Date: 2017-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9086962

13.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 159

Chemoheterotrophy

Aerobic_Chemoheterotrophy 138

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 30

Aromatic_Compound_Degradation

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Human_Associated 10

Human_Associated

Fermentation 9

Fermentation

Nitrate_Reduction 9

Nitrate_Reduction

Ureolysis 9

Ureolysis

Methylotrophy 8

Methylotrophy

Human_Pathogens_All 8

Human_Pathogens_All

Methanol_Oxidation 6

Methanol_Oxidation

Human_Pathogens_Nosocomia 5

Human_Pathogens_Nosocomia

Nitrogen_Fixation 3

Nitrogen_Fixation

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 3

Human_Pathogens_Pneumonia

Methanotrophy 2

Methanotrophy

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 1

Intracellular_Parasites

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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