SRR9086961 - Rhodnius pallescens

Basic Information

Run: SRR9086961

Assay Type: AMPLICON

Biosample: SAMN11673120

Bytes: 22023185

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA543522

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Veraguas

Latitude/Longitude: 8.3098 N 81.0308 W

Sample Information

Host: Rhodnius pallescens

Isolation: -

Biosample Model: -

Collection Date: 2017-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR9086961

21.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 212

Chemoheterotrophy

Aerobic_Chemoheterotrophy 170

Aerobic_Chemoheterotrophy

Fermentation 43

Fermentation

Aromatic_Compound_Degradation 38

Aromatic_Compound_Degradation

Nitrate_Reduction 22

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 16

Animal_Parasites_Or_Symbionts

Human_Associated 15

Human_Associated

Human_Pathogens_All 11

Human_Pathogens_All

Xylanolysis 7

Xylanolysis

Human_Pathogens_Nosocomia 6

Human_Pathogens_Nosocomia

Ureolysis 6

Ureolysis

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 3

Human_Pathogens_Pneumonia

Intracellular_Parasites 3

Intracellular_Parasites

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

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