SRR9086942 - Rhodnius pallescens

Basic Information

Run: SRR9086942

Assay Type: AMPLICON

Biosample: SAMN11673088

Bytes: 16656974

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA543522

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Trinidad de las Minas

Latitude/Longitude: 8.4671 N 79.5945 W

Sample Information

Host: Rhodnius pallescens

Isolation: -

Biosample Model: -

Collection Date: 2013-06-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR9086942
15.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Intracellular_Parasites 20
Chemoheterotrophy 16
Aerobic_Chemoheterotrophy 13
Nitrate_Reduction 5
Fermentation 4
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Human_Pathogens_All 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Human_Gut 1
Mammal_Gut 1
Aromatic_Compound_Degradation 1
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