SRR8858429 - Callosobruchus maculatus

Basic Information

Run: SRR8858429

Assay Type: AMPLICON

Biosample: SAMN11338128

Bytes: 20845974

Center Name: UNIVERSITY OF NGAOUNDERE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA530839

Geographic Information

Country: Cameroon

Continent: Africa

Location Name: Cameroon: Ngaoundere

Latitude/Longitude: 7.3276501 N 13.5847197 E

Sample Information

Host: Callosobruchus maculatus

Isolation: -

Biosample Model: -

Collection Date: 2016-10-15

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8858429
19.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 126
Aerobic_Chemoheterotrophy 60
Fermentation 43
Nitrate_Reduction 19
Human_Associated 13
Animal_Parasites_Or_Symbionts 13
Phototrophy 13
Nitrate_Respiration 12
Nitrogen_Respiration 12
Photosynthetic_Cyanobacteria 12
Oxygenic_Photoautotrophy 12
Photoautotrophy 12
Human_Gut 9
Mammal_Gut 9
Methylotrophy 8
Predatory_Or_Exoparasitic 8
Nitrite_Respiration 7
Dark_Oxidation_Of_Sulfur_Compounds 7
Nitrate_Denitrification 6
Nitrite_Denitrification 6
Denitrification 6
Nitrogen_Fixation 6
Aromatic_Compound_Degradation 6
Hydrocarbon_Degradation 6
Dark_Sulfide_Oxidation 5
Human_Pathogens_All 5
Ureolysis 5
Methanotrophy 4
Methanol_Oxidation 4
Respiration_Of_Sulfur_Compounds 3
Xylanolysis 3
Dark_Sulfur_Oxidation 3
Dark_Thiosulfate_Oxidation 3
Aerobic_Ammonia_Oxidation 2
Nitrification 2
Thiosulfate_Respiration 2
Sulfate_Respiration 1
Sulfur_Respiration 1
Sulfite_Respiration 1
Arsenate_Respiration 1
Dissimilatory_Arsenate_Reduction 1
Chitinolysis 1
Dark_Hydrogen_Oxidation 1
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Manganese_Oxidation 1
Human_Pathogens_Nosocomia 1
Plant_Pathogen 1
Dark_Iron_Oxidation 1
Fumarate_Respiration 1
Photoheterotrophy 1
Reductive_Acetogenesis 1
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