SRR8858425 - Callosobruchus maculatus

Basic Information

Run: SRR8858425

Assay Type: AMPLICON

Biosample: SAMN11338134

Bytes: 13169017

Center Name: UNIVERSITY OF NGAOUNDERE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA530839

Geographic Information

Country: Cameroon

Continent: Africa

Location Name: Cameroon: Ngaoundere

Latitude/Longitude: 7.3276501 N 13.5847197 E

Sample Information

Host: Callosobruchus maculatus

Isolation: -

Biosample Model: -

Collection Date: 2016-10-15

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8858425
12.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42
Aerobic_Chemoheterotrophy 27
Fermentation 11
Nitrate_Reduction 11
Human_Associated 8
Animal_Parasites_Or_Symbionts 8
Human_Pathogens_All 6
Nitrate_Respiration 5
Nitrogen_Respiration 5
Ureolysis 3
Human_Gut 2
Mammal_Gut 2
Aromatic_Compound_Degradation 2
Hydrocarbon_Degradation 2
Methanol_Oxidation 1
Methylotrophy 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Human_Pathogens_Septicemia 1
Plant_Pathogen 1
Aerobic_Anoxygenic_Phototrophy 1
Photoheterotrophy 1
Phototrophy 1
Reductive_Acetogenesis 1
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