SRR8712545 - Trichoptera sp.

Basic Information

Run: SRR8712545

Assay Type: AMPLICON

Biosample: SAMN11104328

Bytes: 39580367

Center Name: INSTITUTE OF SYSTEMATICS AND ECOLOGY OF ANIMALS SB

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA526436

Geographic Information

Country: Russia

Continent: Europe

Location Name: Russia: Lake Teletskoye

Latitude/Longitude: 51.79 N 87.30 E

Sample Information

Host: Trichoptera sp.

Isolation: -

Biosample Model: -

Collection Date: 2017-09-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8712545
37.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 244
Aerobic_Chemoheterotrophy 171
Phototrophy 73
Photosynthetic_Cyanobacteria 66
Oxygenic_Photoautotrophy 66
Photoautotrophy 66
Fermentation 36
Methylotrophy 29
Nitrate_Reduction 26
Methanotrophy 18
Hydrocarbon_Degradation 18
Ureolysis 15
Methanol_Oxidation 12
Nitrate_Respiration 11
Nitrogen_Respiration 11
Photoheterotrophy 7
Dark_Hydrogen_Oxidation 5
Nitrogen_Fixation 4
Fumarate_Respiration 4
Sulfate_Respiration 3
Sulfite_Respiration 3
Respiration_Of_Sulfur_Compounds 3
Chitinolysis 3
Nitrite_Respiration 3
Predatory_Or_Exoparasitic 3
Knallgas_Bacteria 2
Nitrate_Ammonification 2
Nitrite_Ammonification 2
Dark_Sulfur_Oxidation 2
Dark_Thiosulfate_Oxidation 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Iron_Respiration 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Aromatic_Compound_Degradation 1
Intracellular_Parasites 1
Reductive_Acetogenesis 1
Back to Amplicons List
Back to Table