SRR8712543 - Trichoptera sp.

Basic Information

Run: SRR8712543

Assay Type: AMPLICON

Biosample: SAMN11104317

Bytes: 24451922

Center Name: INSTITUTE OF SYSTEMATICS AND ECOLOGY OF ANIMALS SB

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA526436

Geographic Information

Country: Russia

Continent: Europe

Location Name: Russia: Lake Teletskoye

Latitude/Longitude: 51.79 N 87.30 E

Sample Information

Host: Trichoptera sp.

Isolation: -

Biosample Model: -

Collection Date: 2017-09-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR8712543

23.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 193

Chemoheterotrophy

Aerobic_Chemoheterotrophy 166

Aerobic_Chemoheterotrophy

Phototrophy 97

Phototrophy

Photosynthetic_Cyanobacteria 94

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 94

Oxygenic_Photoautotrophy

Photoautotrophy 94

Photoautotrophy

Methylotrophy 20

Methylotrophy

Methanotrophy 13

Methanotrophy

Hydrocarbon_Degradation 13

Hydrocarbon_Degradation

Ureolysis 12

Ureolysis

Nitrate_Reduction 9

Nitrate_Reduction

Methanol_Oxidation 7

Methanol_Oxidation

Nitrogen_Fixation 5

Nitrogen_Fixation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Intracellular_Parasites 3

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Photoheterotrophy 3

Photoheterotrophy

Chitinolysis 2

Chitinolysis

Knallgas_Bacteria 2

Knallgas_Bacteria

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrate_Ammonification 2

Nitrate_Ammonification

Nitrite_Ammonification 2

Nitrite_Ammonification

Nitrite_Respiration 2

Nitrite_Respiration

Iron_Respiration 2

Iron_Respiration

Fumarate_Respiration 2

Fumarate_Respiration

Fermentation 1

Fermentation

Human_Pathogens_All 1

Human_Pathogens_All

Human_Associated 1

Human_Associated

Animal_Parasites_Or_Symbionts 1

Animal_Parasites_Or_Symbionts

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

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