SRR8707193 - Coregonus lavaretus pidshian

Basic Information

Run: SRR8707193

Assay Type: AMPLICON

Biosample: SAMN11097470

Bytes: 21594075

Center Name: INSTITUTE OF SYSTEMATICS AND ECOLOGY OF ANIMALS SB

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA526346

Geographic Information

Country: Russia

Continent: Europe

Location Name: Russia: Lake Teletskoye

Latitude/Longitude: 51.79 N 87.30 E

Sample Information

Host: Coregonus lavaretus pidshian

Isolation: -

Biosample Model: -

Collection Date: 2017-08-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8707193
20.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 98
Aerobic_Chemoheterotrophy 74
Phototrophy 68
Photosynthetic_Cyanobacteria 64
Oxygenic_Photoautotrophy 64
Photoautotrophy 64
Intracellular_Parasites 17
Methylotrophy 11
Nitrate_Reduction 11
Fermentation 10
Methanol_Oxidation 8
Aromatic_Compound_Degradation 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Photoheterotrophy 4
Methanotrophy 3
Hydrocarbon_Degradation 3
Predatory_Or_Exoparasitic 3
Ureolysis 3
Nitrogen_Fixation 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Chitinolysis 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nonphotosynthetic_Cyanobacteria 1
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