SRR8707132 - Coregonus lavaretus pidshian

Basic Information

Run: SRR8707132

Assay Type: AMPLICON

Biosample: SAMN11097441

Bytes: 19845800

Center Name: INSTITUTE OF SYSTEMATICS AND ECOLOGY OF ANIMALS SB

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA526346

Geographic Information

Country: Russia

Continent: Europe

Location Name: Russia: Lake Teletskoye

Latitude/Longitude: 51.79 N 87.30 E

Sample Information

Host: Coregonus lavaretus pidshian

Isolation: -

Biosample Model: -

Collection Date: 2017-08-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8707132
18.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 57
Phototrophy 49
Photosynthetic_Cyanobacteria 41
Oxygenic_Photoautotrophy 41
Photoautotrophy 41
Aerobic_Chemoheterotrophy 34
Methylotrophy 14
Methanotrophy 13
Hydrocarbon_Degradation 13
Fermentation 11
Nitrate_Reduction 11
Photoheterotrophy 8
Ureolysis 7
Dark_Hydrogen_Oxidation 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Human_Pathogens_All 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Knallgas_Bacteria 2
Nitrate_Ammonification 2
Nitrite_Ammonification 2
Nitrite_Respiration 2
Dark_Sulfur_Oxidation 2
Dark_Thiosulfate_Oxidation 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Iron_Respiration 2
Fumarate_Respiration 2
Intracellular_Parasites 2
Methanol_Oxidation 1
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Chitinolysis 1
Nitrogen_Fixation 1
Aromatic_Compound_Degradation 1
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