SRR8575422 - Paracoccus marginatus

Basic Information

Run: SRR8575422

Assay Type: AMPLICON

Biosample: SAMN10929006

Bytes: 1177329275

Center Name: AGRICULTURAL COLLEGE AND RESEARCH INSTITUTE, MADURAI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA522349

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 9.933333 N 78.116667 E

Sample Information

Host: Paracoccus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2014-04-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8575422
1.1 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 14
Aerobic_Chemoheterotrophy 13
Aromatic_Compound_Degradation 4
Nitrate_Reduction 3
Methanol_Oxidation 2
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrite_Respiration 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nitrogen_Fixation 1
Fermentation 1
Intracellular_Parasites 1
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