SRR8512180 - not collected

Basic Information

Run: SRR8512180

Assay Type: AMPLICON

Biosample: SAMN10844456

Bytes: 12290763

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA517766

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: missing

Latitude/Longitude: not collected

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2017-11-28

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8512180
11.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 51
Aerobic_Chemoheterotrophy 35
Nitrate_Reduction 12
Fermentation 10
Nitrate_Respiration 7
Nitrogen_Respiration 7
Nitrite_Respiration 3
Animal_Parasites_Or_Symbionts 3
Methanol_Oxidation 2
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Chitinolysis 2
Human_Pathogens_All 2
Human_Associated 2
Aromatic_Compound_Degradation 2
Ureolysis 2
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Thiosulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Nitrogen_Fixation 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
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