SRR8512165 - not collected

Basic Information

Run: SRR8512165

Assay Type: AMPLICON

Biosample: SAMN10844485

Bytes: 20550118

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA517766

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: missing

Latitude/Longitude: not collected

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2017-11-28

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR8512165

19.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 133

Chemoheterotrophy

Aerobic_Chemoheterotrophy 76

Aerobic_Chemoheterotrophy

Fermentation 30

Fermentation

Nitrate_Reduction 18

Nitrate_Reduction

Nitrate_Respiration 10

Nitrate_Respiration

Nitrogen_Respiration 10

Nitrogen_Respiration

Ureolysis 7

Ureolysis

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 6

Predatory_Or_Exoparasitic

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Methylotrophy 4

Methylotrophy

Chitinolysis 4

Chitinolysis

Nitrogen_Fixation 4

Nitrogen_Fixation

Nitrite_Respiration 4

Nitrite_Respiration

Human_Associated 4

Human_Associated

Hydrocarbon_Degradation 4

Hydrocarbon_Degradation

Methanol_Oxidation 3

Methanol_Oxidation

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Human_Pathogens_All 3

Human_Pathogens_All

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Xylanolysis 2

Xylanolysis

Methanotrophy 1

Methanotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Ligninolysis 1

Ligninolysis

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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