SRR8512159 - not collected

Basic Information

Run: SRR8512159

Assay Type: AMPLICON

Biosample: SAMN10844461

Bytes: 14296676

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA517766

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: missing

Latitude/Longitude: not collected

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2017-11-28

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR8512159

13.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 61

Chemoheterotrophy

Fermentation 26

Fermentation

Aerobic_Chemoheterotrophy 26

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 9

Animal_Parasites_Or_Symbionts

Human_Associated 6

Human_Associated

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Ureolysis 5

Ureolysis

Human_Pathogens_All 4

Human_Pathogens_All

Sulfate_Respiration 3

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Chitinolysis 2

Chitinolysis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Invertebrate_Parasites 2

Invertebrate_Parasites

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Manganese_Oxidation 1

Manganese_Oxidation

Fumarate_Respiration 1

Fumarate_Respiration

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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