SRR8512147 - not collected

Basic Information

Run: SRR8512147

Assay Type: AMPLICON

Biosample: SAMN10844440

Bytes: 15246153

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA517766

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: missing

Latitude/Longitude: not collected

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2017-11-28

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR8512147

14.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 195

Chemoheterotrophy

Aerobic_Chemoheterotrophy 116

Aerobic_Chemoheterotrophy

Fermentation 36

Fermentation

Nitrate_Reduction 16

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 9

Animal_Parasites_Or_Symbionts

Predatory_Or_Exoparasitic 9

Predatory_Or_Exoparasitic

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Human_Associated 7

Human_Associated

Ureolysis 6

Ureolysis

Chitinolysis 5

Chitinolysis

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methylotrophy 4

Methylotrophy

Aerobic_Ammonia_Oxidation 4

Aerobic_Ammonia_Oxidation

Nitrification 4

Nitrification

Human_Pathogens_All 4

Human_Pathogens_All

Hydrocarbon_Degradation 4

Hydrocarbon_Degradation

Methanol_Oxidation 3

Methanol_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Xylanolysis 3

Xylanolysis

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Sulfate_Respiration 2

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Sulfite_Respiration 1

Sulfite_Respiration

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Manganese_Oxidation 1

Manganese_Oxidation

Invertebrate_Parasites 1

Invertebrate_Parasites

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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