SRR837401 - None

Basic Information

Run: SRR837401

Assay Type: AMPLICON

Biosample: SAMN02086966

Bytes: 70898742

Center Name: C.N.R. - INSTITUTE FOR COASTAL MARINE ENVIRONMENT

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX Titanium

Library Layout: SINGLE

Bioproject: PRJNA196888

Geographic Information

Country: Italy

Continent: Europe

Location Name: Italy: Palermo

Latitude/Longitude: 38.19 N 13.33 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2011-04-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR837401
67.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 50
Fermentation 47
Nitrate_Reduction 12
Human_Associated 7
Animal_Parasites_Or_Symbionts 7
Human_Gut 6
Mammal_Gut 6
Nitrite_Respiration 5
Human_Pathogens_All 5
Nitrate_Respiration 5
Nitrogen_Respiration 5
Nitrate_Ammonification 4
Nitrite_Ammonification 4
Aerobic_Chemoheterotrophy 4
Ureolysis 3
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Xylanolysis 1
Human_Pathogens_Gastroenteritis 1
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