SRR8268664 - Spodoptera frugiperda

Basic Information

Run: SRR8268664

Assay Type: AMPLICON

Biosample: SAMN10498791

Bytes: 13631193

Center Name: PENN STATE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA507591

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Pennsylvania

Latitude/Longitude: not collected

Sample Information

Host: Spodoptera frugiperda

Isolation: -

Biosample Model: -

Collection Date: 2024-09-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8268664
13.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 3
Ureolysis 2
Methanol_Oxidation 1
Methylotrophy 1
Aerobic_Chemoheterotrophy 1
Aromatic_Hydrocarbon_Degradation 1
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
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