SRR8178497 - Opsiphanes cassina

Basic Information

Run: SRR8178497

Assay Type: AMPLICON

Biosample: SAMN10394222

Bytes: 26621469

Center Name: UNIVERSITY OF ARIZONA

Classification: 16S or ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA504511

Geographic Information

Country: Costa Rica

Continent: North America

Location Name: Costa Rica: La Selva Biological Station

Latitude/Longitude: 10.430470 N 84.006948 W

Sample Information

Host: Opsiphanes cassina

Isolation: -

Biosample Model: -

Collection Date: 2013-02-08

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8178497
25.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 27
Aerobic_Chemoheterotrophy 16
Fermentation 8
Aromatic_Compound_Degradation 3
Nitrate_Respiration 2
Nitrate_Reduction 2
Nitrogen_Respiration 2
Methanol_Oxidation 1
Methylotrophy 1
Sulfur_Respiration 1
Thiosulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Arsenate_Respiration 1
Dissimilatory_Arsenate_Reduction 1
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Fumarate_Respiration 1
Ureolysis 1
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