SRR8177406 - eggplant

Basic Information

Run: SRR8177406

Assay Type: AMPLICON

Biosample: SAMN10395154

Bytes: 19132041

Center Name: SCAU

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA503516

Geographic Information

Country: China

Continent: Asia

Location Name: China

Latitude/Longitude: not collected

Sample Information

Host: eggplant

Isolation: -

Biosample Model: -

Collection Date: 2018-05-24

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR8177406
18.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 16
Aerobic_Chemoheterotrophy 13
Aromatic_Compound_Degradation 4
Fermentation 3
Nitrate_Reduction 2
Arsenate_Detoxification 1
Dissimilatory_Arsenate_Reduction 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Plastic_Degradation 1
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