SRR7890320 - Aedes aegypti

Basic Information

Run: SRR7890320

Assay Type: AMPLICON

Biosample: SAMN10089354

Bytes: 186951942

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Quality Control Information

Filter Percentage: 0.0273

QC Average Length: -

Retained Reads: 1269170

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: missing

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7890320

178.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 93

Chemoheterotrophy

Aerobic_Chemoheterotrophy 73

Aerobic_Chemoheterotrophy

Nitrate_Reduction 23

Nitrate_Reduction

Fermentation 17

Fermentation

Nitrate_Respiration 12

Nitrate_Respiration

Nitrogen_Respiration 12

Nitrogen_Respiration

Animal_Parasites_Or_Symbionts 9

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 7

Human_Pathogens_All

Human_Associated 7

Human_Associated

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Ureolysis 6

Ureolysis

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Nitrogen_Fixation 4

Nitrogen_Fixation

Predatory_Or_Exoparasitic 4

Predatory_Or_Exoparasitic

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrite_Respiration 3

Nitrite_Respiration

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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