SRR7890315 - Anopheles quadriannulatus

Basic Information

Run: SRR7890315

Assay Type: AMPLICON

Biosample: SAMN10089329

Bytes: 54715296

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Latitude/Longitude: missing

Sample Information

Host: Anopheles quadriannulatus

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR7890315
52.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 47
Fermentation 25
Aerobic_Chemoheterotrophy 21
Nitrate_Reduction 10
Animal_Parasites_Or_Symbionts 5
Methanol_Oxidation 4
Methylotrophy 4
Aromatic_Compound_Degradation 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrite_Respiration 2
Ureolysis 2
Human_Pathogens_All 1
Human_Associated 1
Photoheterotrophy 1
Phototrophy 1
Back to Amplicons List
Back to Table