SRR7890303 - Anopheles gambiae

Basic Information

Run: SRR7890303

Assay Type: AMPLICON

Biosample: SAMN10089347

Bytes: 106336221

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Quality Control Information

Filter Percentage: 0.0425

QC Average Length: -

Retained Reads: 739658

Geographic Information

Country: Kenya

Continent: Africa

Location Name: Kenya

Latitude/Longitude: missing

Sample Information

Host: Anopheles gambiae

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR7890303
101.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Aerobic_Chemoheterotrophy 10
Chemoheterotrophy 10
Nitrate_Reduction 2
Nitrogen_Fixation 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Predatory_Or_Exoparasitic 1
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