SRR7890298 - Aedes aegypti

Basic Information

Run: SRR7890298

Assay Type: AMPLICON

Biosample: SAMN10089334

Bytes: 183546896

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: missing

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7890298

175.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 105

Chemoheterotrophy

Aerobic_Chemoheterotrophy 84

Aerobic_Chemoheterotrophy

Nitrate_Reduction 25

Nitrate_Reduction

Nitrate_Respiration 15

Nitrate_Respiration

Nitrogen_Respiration 15

Nitrogen_Respiration

Fermentation 14

Fermentation

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 13

Human_Pathogens_All

Human_Associated 13

Human_Associated

Methanol_Oxidation 8

Methanol_Oxidation

Methylotrophy 8

Methylotrophy

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Ureolysis 7

Ureolysis

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Intracellular_Parasites 2

Intracellular_Parasites

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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