SRR7890297 - Aedes aegypti

Basic Information

Run: SRR7890297

Assay Type: AMPLICON

Biosample: SAMN10089335

Bytes: 45981314

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: missing

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR7890297
43.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Aerobic_Chemoheterotrophy 39
Nitrate_Reduction 16
Fermentation 9
Animal_Parasites_Or_Symbionts 9
Nitrate_Respiration 9
Nitrogen_Respiration 9
Human_Pathogens_All 8
Human_Associated 8
Methanol_Oxidation 3
Methylotrophy 3
Aromatic_Compound_Degradation 3
Ureolysis 3
Nitrogen_Fixation 2
Intracellular_Parasites 2
Predatory_Or_Exoparasitic 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Nonphotosynthetic_Cyanobacteria 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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