SRR7890292 - Anopheles stephensi

Basic Information

Run: SRR7890292

Assay Type: AMPLICON

Biosample: SAMN10089332

Bytes: 86456404

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: Pakistan

Continent: Asia

Location Name: Pakistan

Latitude/Longitude: missing

Sample Information

Host: Anopheles stephensi

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7890292

82.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 58

Chemoheterotrophy

Aerobic_Chemoheterotrophy 37

Aerobic_Chemoheterotrophy

Fermentation 18

Fermentation

Nitrate_Reduction 14

Nitrate_Reduction

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Ureolysis 4

Ureolysis

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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