SRR7890279 - Aedes aegypti

Basic Information

Run: SRR7890279

Assay Type: AMPLICON

Biosample: SAMN10089317

Bytes: 146973770

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: missing

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7890279

140.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 95

Chemoheterotrophy

Aerobic_Chemoheterotrophy 83

Aerobic_Chemoheterotrophy

Nitrate_Reduction 26

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 12

Nitrate_Respiration

Nitrogen_Respiration 12

Nitrogen_Respiration

Human_Pathogens_All 11

Human_Pathogens_All

Human_Associated 11

Human_Associated

Aromatic_Compound_Degradation 10

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 10

Predatory_Or_Exoparasitic

Fermentation 9

Fermentation

Ureolysis 7

Ureolysis

Nitrogen_Fixation 4

Nitrogen_Fixation

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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