SRR7890271 - Aedes albopictus

Basic Information

Run: SRR7890271

Assay Type: AMPLICON

Biosample: SAMN10089357

Bytes: 160607257

Center Name: UNIVERSITY OF PERUGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA416453

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: missing

Sample Information

Host: Aedes albopictus

Isolation: -

Biosample Model: -

Collection Date: 1905-07-06

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7890271

153.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 66

Chemoheterotrophy

Aerobic_Chemoheterotrophy 51

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Fermentation 9

Fermentation

Predatory_Or_Exoparasitic 6

Predatory_Or_Exoparasitic

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Human_Pathogens_All 4

Human_Pathogens_All

Human_Associated 4

Human_Associated

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Ureolysis 4

Ureolysis

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 2

Intracellular_Parasites

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Back to Amplicons List

Back to Table