SRR7101155 - Ruspolia differens

Basic Information

Run: SRR7101155

Assay Type: AMPLICON

Biosample: SAMN09010858

Bytes: 60232490

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Masaka

Latitude/Longitude: 0.3267 S 31.7537 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101155

57.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 125

Chemoheterotrophy

Aerobic_Chemoheterotrophy 91

Aerobic_Chemoheterotrophy

Fermentation 25

Fermentation

Nitrate_Reduction 20

Nitrate_Reduction

Methanol_Oxidation 16

Methanol_Oxidation

Methylotrophy 16

Methylotrophy

Ureolysis 16

Ureolysis

Human_Associated 14

Human_Associated

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 12

Human_Pathogens_All

Nitrate_Respiration 12

Nitrate_Respiration

Nitrogen_Respiration 12

Nitrogen_Respiration

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Nitrate_Denitrification 7

Nitrate_Denitrification

Nitrite_Denitrification 7

Nitrite_Denitrification

Denitrification 7

Denitrification

Dark_Hydrogen_Oxidation 7

Dark_Hydrogen_Oxidation

Nitrite_Respiration 7

Nitrite_Respiration

Nitrogen_Fixation 2

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Chitinolysis 1

Chitinolysis

Manganese_Oxidation 1

Manganese_Oxidation

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Intracellular_Parasites 1

Intracellular_Parasites

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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