SRR7101149 - Ruspolia differens

Basic Information

Run: SRR7101149

Assay Type: AMPLICON

Biosample: SAMN09010864

Bytes: 57739616

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Kampala

Latitude/Longitude: 0.3476 N 32.5825 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101149

55.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 137

Chemoheterotrophy

Aerobic_Chemoheterotrophy 100

Aerobic_Chemoheterotrophy

Fermentation 29

Fermentation

Nitrate_Reduction 25

Nitrate_Reduction

Ureolysis 17

Ureolysis

Aromatic_Compound_Degradation 16

Aromatic_Compound_Degradation

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 12

Methanol_Oxidation

Methylotrophy 12

Methylotrophy

Human_Pathogens_All 12

Human_Pathogens_All

Human_Associated 12

Human_Associated

Nitrate_Respiration 9

Nitrate_Respiration

Nitrogen_Respiration 9

Nitrogen_Respiration

Nitrate_Denitrification 6

Nitrate_Denitrification

Nitrite_Denitrification 6

Nitrite_Denitrification

Denitrification 6

Denitrification

Nitrite_Respiration 6

Nitrite_Respiration

Phototrophy 6

Phototrophy

Dark_Hydrogen_Oxidation 5

Dark_Hydrogen_Oxidation

Chitinolysis 3

Chitinolysis

Manganese_Oxidation 3

Manganese_Oxidation

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Photoheterotrophy 3

Photoheterotrophy

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Invertebrate_Parasites 1

Invertebrate_Parasites

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Back to Amplicons List

Back to Table