SRR7101147 - Ruspolia differens

Basic Information

Run: SRR7101147

Assay Type: AMPLICON

Biosample: SAMN09010866

Bytes: 54770291

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Kampala

Latitude/Longitude: 0.3476 N 32.5825 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101147

52.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 85

Chemoheterotrophy

Aerobic_Chemoheterotrophy 53

Aerobic_Chemoheterotrophy

Fermentation 30

Fermentation

Animal_Parasites_Or_Symbionts 15

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 15

Nitrate_Reduction

Ureolysis 13

Ureolysis

Human_Pathogens_All 8

Human_Pathogens_All

Human_Associated 8

Human_Associated

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Invertebrate_Parasites 6

Invertebrate_Parasites

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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