SRR7101146 - Ruspolia differens

Basic Information

Run: SRR7101146

Assay Type: AMPLICON

Biosample: SAMN09010879

Bytes: 53885980

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Kampala

Latitude/Longitude: 0.3476 N 32.5825 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR7101146
51.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 72
Aerobic_Chemoheterotrophy 35
Fermentation 28
Ureolysis 11
Methanol_Oxidation 10
Methylotrophy 10
Nitrate_Reduction 9
Aromatic_Compound_Degradation 7
Animal_Parasites_Or_Symbionts 4
Human_Pathogens_All 3
Human_Associated 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Manganese_Oxidation 1
Human_Pathogens_Nosocomia 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Intracellular_Parasites 1
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