SRR7101134 - Ruspolia differens

Basic Information

Run: SRR7101134

Assay Type: AMPLICON

Biosample: SAMN09010901

Bytes: 48716040

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Fort Portal

Latitude/Longitude: 0.6546 N 30.2801 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101134

46.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 396

Chemoheterotrophy

Aerobic_Chemoheterotrophy 327

Aerobic_Chemoheterotrophy

Fermentation 49

Fermentation

Phototrophy 46

Phototrophy

Photosynthetic_Cyanobacteria 40

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 40

Oxygenic_Photoautotrophy

Photoautotrophy 40

Photoautotrophy

Ureolysis 34

Ureolysis

Aromatic_Compound_Degradation 29

Aromatic_Compound_Degradation

Nitrate_Reduction 24

Nitrate_Reduction

Methylotrophy 21

Methylotrophy

Methanol_Oxidation 19

Methanol_Oxidation

Animal_Parasites_Or_Symbionts 16

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 14

Human_Pathogens_All

Human_Associated 14

Human_Associated

Nitrate_Respiration 12

Nitrate_Respiration

Nitrogen_Respiration 12

Nitrogen_Respiration

Nitrogen_Fixation 11

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 8

Dark_Oxidation_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 6

Dark_Hydrogen_Oxidation

Intracellular_Parasites 6

Intracellular_Parasites

Photoheterotrophy 6

Photoheterotrophy

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Nitrite_Respiration 4

Nitrite_Respiration

Chitinolysis 3

Chitinolysis

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Aerobic_Anoxygenic_Phototrophy 3

Aerobic_Anoxygenic_Phototrophy

Methanotrophy 2

Methanotrophy

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 2

Hydrogenotrophic_Methanogenesis

Methanogenesis 2

Methanogenesis

Cellulolysis 2

Cellulolysis

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Xylanolysis 1

Xylanolysis

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

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